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m3taversal 686ef3fd7f Replace rebase-retry with cherry-pick merge mechanism 
- _cherry_pick_onto_main replaces _rebase_and_push: creates fresh branch
  from origin/main, cherry-picks extraction commits, force-pushes
- Eliminates ~23% merge failure rate from rebase race conditions
- Agent branch protection: PIPELINE_OWNED_PREFIXES filter in SQL prevents
  auto-merge of agent-owned branches (theseus/*, rio/*, etc.)
- Empty-commit handling: skips already-merged content gracefully
- Entity conflict auto-resolution preserved for cherry-pick path
- Post-pick evidence dedup runs as safety net (same as post-rebase)
- Separate fetch calls for main and branch (fixes long branch name issue)

Fixes: PRs #2141, #157, #2142, #2180 (agent branch orphaning)
Fixes: ~23% merge failure rate (rebase race condition)
Related: PRs #1751, #1752 (enrichment dedup shares root cause)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-03-31 13:18:26 +01:00
..
__init__.py Initial commit: Pipeline v2 daemon + infrastructure docs 2026-03-12 14:11:18 +00:00
analytics.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
attribution.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
breaker.py ganymede: add dev infrastructure — pyproject.toml, CI, deploy script 2026-03-13 14:24:27 +00:00
claim_index.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
config.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
connect.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
costs.py Initial commit: Pipeline v2 daemon + infrastructure docs 2026-03-12 14:11:18 +00:00
db.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
dedup.py fix: enrichment idempotency — three-layer dedup prevents duplicate evidence blocks 2026-03-31 13:18:23 +01:00
domains.py ganymede: extract lib/domains.py — single domain→agent mapping 2026-03-13 15:33:18 +00:00
entity_batch.py fix: enrichment idempotency — three-layer dedup prevents duplicate evidence blocks 2026-03-31 13:18:23 +01:00
entity_queue.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
evaluate.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
extraction_prompt.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
feedback.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
fixer.py fix: fixer GC now closes PRs on Forgejo + deletes branches, not just DB 2026-03-24 14:37:50 +00:00
forgejo.py leo: handle non-JSON 200 from Forgejo merge API 2026-03-13 17:38:00 +00:00
health.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
llm.py fix: zombie retry loop + cost tracking 2026-03-28 11:29:58 +00:00
log.py Initial commit: Pipeline v2 daemon + infrastructure docs 2026-03-12 14:11:18 +00:00
merge.py Replace rebase-retry with cherry-pick merge mechanism 2026-03-31 13:18:26 +01:00
post_extract.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
search.py feat: two-pass retrieval with sort order and graph expansion 2026-03-28 22:34:45 +00:00
stale_pr.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
substantive_fixer.py fix: zombie retry loop + cost tracking 2026-03-28 11:29:58 +00:00
validate.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00
watchdog.py feat: atomic extract-and-connect + stale PR monitor + response audit 2026-03-28 22:34:20 +00:00
worktree_lock.py epimetheus: sync VPS-deployed code to repo — Mar 18-20 reliability + features 2026-03-20 20:17:27 +00:00