teleo-infrastructure/lib/db.py
2026-05-29 15:08:09 +02:00

1035 lines
43 KiB
Python

"""SQLite database — schema, migrations, connection management."""
import json
import logging
import sqlite3
from contextlib import contextmanager
from . import config
logger = logging.getLogger("pipeline.db")
SCHEMA_VERSION = 27
SCHEMA_SQL = """
CREATE TABLE IF NOT EXISTS schema_version (
version INTEGER PRIMARY KEY,
applied_at TEXT DEFAULT (datetime('now'))
);
CREATE TABLE IF NOT EXISTS sources (
path TEXT PRIMARY KEY,
status TEXT NOT NULL DEFAULT 'unprocessed',
-- unprocessed, triaging, extracting, extracted, null_result,
-- needs_reextraction, error
priority TEXT DEFAULT 'medium',
-- critical, high, medium, low, skip
priority_log TEXT DEFAULT '[]',
-- JSON array: [{stage, priority, reasoning, ts}]
extraction_model TEXT,
claims_count INTEGER DEFAULT 0,
pr_number INTEGER,
transient_retries INTEGER DEFAULT 0,
substantive_retries INTEGER DEFAULT 0,
last_error TEXT,
feedback TEXT,
-- eval feedback for re-extraction (JSON)
cost_usd REAL DEFAULT 0,
-- v26: provenance — publisher (news org / venue) + content author.
-- publisher_id references publishers(id) when source is from a known org.
-- original_author_handle references contributors(handle) when author is in our system.
-- original_author is free-text fallback ("Kim et al.", "Robin Hanson") — not credit-bearing.
publisher_id INTEGER REFERENCES publishers(id),
content_type TEXT,
-- article | paper | tweet | conversation | self_authored | webpage | podcast
original_author TEXT,
original_author_handle TEXT REFERENCES contributors(handle),
created_at TEXT DEFAULT (datetime('now')),
updated_at TEXT DEFAULT (datetime('now'))
);
CREATE TABLE IF NOT EXISTS prs (
number INTEGER PRIMARY KEY,
source_path TEXT REFERENCES sources(path),
branch TEXT,
status TEXT NOT NULL DEFAULT 'open',
-- validating, open, reviewing, approved, merging, merged, closed, zombie, conflict
-- conflict: rebase failed or merge timed out — needs human intervention
domain TEXT,
agent TEXT,
commit_type TEXT CHECK(commit_type IS NULL OR commit_type IN ('extract', 'research', 'entity', 'decision', 'reweave', 'fix', 'challenge', 'enrich', 'synthesize', 'unknown')),
tier TEXT,
-- LIGHT, STANDARD, DEEP
tier0_pass INTEGER,
-- 0/1
leo_verdict TEXT DEFAULT 'pending',
-- pending, approve, request_changes, skipped, failed
domain_verdict TEXT DEFAULT 'pending',
domain_agent TEXT,
domain_model TEXT,
priority TEXT,
-- NULL = inherit from source. Set explicitly for human-submitted PRs.
-- Pipeline PRs: COALESCE(p.priority, s.priority, 'medium')
-- Human PRs: 'critical' (detected via missing source_path or non-agent author)
origin TEXT DEFAULT 'pipeline',
-- pipeline | human | external
transient_retries INTEGER DEFAULT 0,
substantive_retries INTEGER DEFAULT 0,
last_error TEXT,
last_attempt TEXT,
cost_usd REAL DEFAULT 0,
auto_merge INTEGER DEFAULT 0,
github_pr INTEGER,
source_channel TEXT,
created_at TEXT DEFAULT (datetime('now')),
merged_at TEXT
);
CREATE TABLE IF NOT EXISTS costs (
date TEXT,
model TEXT,
stage TEXT,
calls INTEGER DEFAULT 0,
input_tokens INTEGER DEFAULT 0,
output_tokens INTEGER DEFAULT 0,
cost_usd REAL DEFAULT 0,
duration_ms INTEGER DEFAULT 0,
cache_read_tokens INTEGER DEFAULT 0,
cache_write_tokens INTEGER DEFAULT 0,
cost_estimate_usd REAL DEFAULT 0,
PRIMARY KEY (date, model, stage)
);
CREATE TABLE IF NOT EXISTS circuit_breakers (
name TEXT PRIMARY KEY,
state TEXT DEFAULT 'closed',
-- closed, open, halfopen
failures INTEGER DEFAULT 0,
successes INTEGER DEFAULT 0,
tripped_at TEXT,
last_success_at TEXT,
-- heartbeat: if now() - last_success_at > 2*interval, stage is stalled (Vida)
last_update TEXT DEFAULT (datetime('now'))
);
CREATE TABLE IF NOT EXISTS audit_log (
id INTEGER PRIMARY KEY AUTOINCREMENT,
timestamp TEXT DEFAULT (datetime('now')),
stage TEXT,
event TEXT,
detail TEXT
);
CREATE TABLE IF NOT EXISTS response_audit (
id INTEGER PRIMARY KEY AUTOINCREMENT,
timestamp TEXT NOT NULL DEFAULT (datetime('now')),
chat_id INTEGER,
user TEXT,
agent TEXT DEFAULT 'rio',
model TEXT,
query TEXT,
conversation_window TEXT,
-- JSON: prior N messages for context
-- NOTE: intentional duplication of transcript data for audit self-containment.
-- Transcripts live in /opt/teleo-eval/transcripts/ but audit rows need prompt
-- context inline for retrieval-quality diagnosis. Primary driver of row size —
-- target for cleanup when 90-day retention policy lands.
entities_matched TEXT,
-- JSON: [{name, path, score, used_in_response}]
claims_matched TEXT,
-- JSON: [{path, title, score, source, used_in_response}]
retrieval_layers_hit TEXT,
-- JSON: ["keyword","qdrant","graph"]
retrieval_gap TEXT,
-- What the KB was missing (if anything)
market_data TEXT,
-- JSON: injected token prices
research_context TEXT,
-- Haiku pre-pass results if any
kb_context_text TEXT,
-- Full context string sent to model
tool_calls TEXT,
-- JSON: ordered array [{tool, input, output, duration_ms, ts}]
raw_response TEXT,
display_response TEXT,
confidence_score REAL,
-- Model self-rated retrieval quality 0.0-1.0
response_time_ms INTEGER,
-- Eval pipeline columns (v10)
prompt_tokens INTEGER,
completion_tokens INTEGER,
generation_cost REAL,
embedding_cost REAL,
total_cost REAL,
blocked INTEGER DEFAULT 0,
block_reason TEXT,
query_type TEXT,
created_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_sources_status ON sources(status);
CREATE INDEX IF NOT EXISTS idx_prs_status ON prs(status);
CREATE INDEX IF NOT EXISTS idx_prs_domain ON prs(domain);
CREATE INDEX IF NOT EXISTS idx_prs_source_path ON prs(source_path) WHERE source_path IS NOT NULL;
CREATE INDEX IF NOT EXISTS idx_costs_date ON costs(date);
CREATE INDEX IF NOT EXISTS idx_audit_stage ON audit_log(stage);
CREATE INDEX IF NOT EXISTS idx_response_audit_ts ON response_audit(timestamp);
CREATE INDEX IF NOT EXISTS idx_response_audit_agent ON response_audit(agent);
CREATE INDEX IF NOT EXISTS idx_response_audit_chat_ts ON response_audit(chat_id, timestamp);
-- Event-sourced contributions (schema v24).
-- One row per credit-earning event. Idempotent via two partial UNIQUE indexes
-- (SQLite treats NULL != NULL in UNIQUE constraints, so a single composite
-- UNIQUE with nullable claim_path would allow evaluator-event duplicates).
-- Leaderboards are SQL aggregations over this table; contributors becomes a materialized cache.
CREATE TABLE IF NOT EXISTS contribution_events (
id INTEGER PRIMARY KEY AUTOINCREMENT,
handle TEXT NOT NULL,
kind TEXT NOT NULL DEFAULT 'person',
-- person | org | agent
role TEXT NOT NULL,
-- author | originator | challenger | synthesizer | evaluator
weight REAL NOT NULL,
pr_number INTEGER NOT NULL,
claim_path TEXT,
-- NULL for PR-level events (e.g. evaluator). Set for per-claim events.
domain TEXT,
channel TEXT,
-- telegram | github | agent | web | unknown
timestamp TEXT NOT NULL DEFAULT (datetime('now'))
);
-- Per-claim events: unique on (handle, role, pr_number, claim_path) when path IS NOT NULL.
CREATE UNIQUE INDEX IF NOT EXISTS idx_ce_unique_claim ON contribution_events(
handle, role, pr_number, claim_path
) WHERE claim_path IS NOT NULL;
-- PR-level events (evaluator, author, trailer-based): unique on (handle, role, pr_number) when path IS NULL.
CREATE UNIQUE INDEX IF NOT EXISTS idx_ce_unique_pr ON contribution_events(
handle, role, pr_number
) WHERE claim_path IS NULL;
CREATE INDEX IF NOT EXISTS idx_ce_handle_ts ON contribution_events(handle, timestamp);
CREATE INDEX IF NOT EXISTS idx_ce_domain_ts ON contribution_events(domain, timestamp);
CREATE INDEX IF NOT EXISTS idx_ce_pr ON contribution_events(pr_number);
CREATE INDEX IF NOT EXISTS idx_ce_role_ts ON contribution_events(role, timestamp);
CREATE INDEX IF NOT EXISTS idx_ce_kind_ts ON contribution_events(kind, timestamp);
-- Handle aliasing. @thesensatore → thesensatore. cameron → cameron-s1.
-- Writers call resolve_alias(handle) before inserting events or upserting contributors.
CREATE TABLE IF NOT EXISTS contributor_aliases (
alias TEXT PRIMARY KEY,
canonical TEXT NOT NULL,
created_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_aliases_canonical ON contributor_aliases(canonical);
-- Publishers: news orgs, academic venues, social platforms. NOT contributors — these
-- provide metadata/provenance for sources, never earn leaderboard credit. Separating
-- these from contributors prevents CNBC/SpaceNews from dominating the leaderboard.
-- (Apr 24 Cory directive: "only credit the original source if its on X or tg")
CREATE TABLE IF NOT EXISTS publishers (
id INTEGER PRIMARY KEY AUTOINCREMENT,
name TEXT NOT NULL UNIQUE,
kind TEXT CHECK(kind IN ('news', 'academic', 'social_platform', 'podcast', 'self', 'internal', 'legal', 'government', 'research_org', 'commercial', 'other')),
url_pattern TEXT,
created_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_publishers_name ON publishers(name);
CREATE INDEX IF NOT EXISTS idx_publishers_kind ON publishers(kind);
-- Multi-platform identity: one contributor, many handles. Enables the leaderboard to
-- unify @thesensatore (X) + thesensatore (TG) + thesensatore@github into one person.
-- Writers check this table after resolving aliases to find canonical contributor handle.
CREATE TABLE IF NOT EXISTS contributor_identities (
contributor_handle TEXT NOT NULL,
platform TEXT NOT NULL CHECK(platform IN ('x', 'telegram', 'github', 'email', 'web', 'internal')),
platform_handle TEXT NOT NULL,
verified INTEGER DEFAULT 0,
created_at TEXT DEFAULT (datetime('now')),
PRIMARY KEY (platform, platform_handle)
);
CREATE INDEX IF NOT EXISTS idx_identities_contributor ON contributor_identities(contributor_handle);
"""
def get_connection(readonly: bool = False) -> sqlite3.Connection:
"""Create a SQLite connection with WAL mode and proper settings."""
config.DB_PATH.parent.mkdir(parents=True, exist_ok=True)
conn = sqlite3.connect(
str(config.DB_PATH),
timeout=30,
isolation_level=None, # autocommit — we manage transactions explicitly
)
conn.row_factory = sqlite3.Row
conn.execute("PRAGMA journal_mode=WAL")
conn.execute("PRAGMA busy_timeout=10000")
conn.execute("PRAGMA foreign_keys=ON")
if readonly:
conn.execute("PRAGMA query_only=ON")
return conn
@contextmanager
def transaction(conn: sqlite3.Connection):
"""Context manager for explicit transactions."""
conn.execute("BEGIN")
try:
yield conn
conn.execute("COMMIT")
except Exception:
conn.execute("ROLLBACK")
raise
# Branch prefix → (agent, commit_type) mapping.
# Single source of truth — used by merge.py at INSERT time and migration v7 backfill.
# Unknown prefixes → ('unknown', 'unknown') + warning log.
# Keep in sync with _CHANNEL_MAP below.
BRANCH_PREFIX_MAP = {
"extract": ("pipeline", "extract"),
"ingestion": ("pipeline", "extract"),
"epimetheus": ("epimetheus", "extract"),
"rio": ("rio", "research"),
"theseus": ("theseus", "research"),
"astra": ("astra", "research"),
"vida": ("vida", "research"),
"clay": ("clay", "research"),
"leo": ("leo", "entity"),
"reweave": ("pipeline", "reweave"),
"fix": ("pipeline", "fix"),
"contrib": ("external", "contrib"),
}
def classify_branch(branch: str) -> tuple[str, str]:
"""Derive (agent, commit_type) from branch prefix.
Returns ('unknown', 'unknown') and logs a warning for unrecognized prefixes.
"""
prefix = branch.split("/", 1)[0] if "/" in branch else branch
# Fork PR branches: gh-pr-N/original-branch
if prefix.startswith("gh-pr-"):
return ("external", "contrib")
result = BRANCH_PREFIX_MAP.get(prefix)
if result is None:
logger.warning("Unknown branch prefix %r in branch %r — defaulting to ('unknown', 'unknown')", prefix, branch)
return ("unknown", "unknown")
return result
# Keep in sync with BRANCH_PREFIX_MAP above.
#
# Valid source_channel values: github | telegram | agent | maintenance | web | unknown
# - github: external contributor PR (set via sync-mirror.sh github_pr linking,
# or from gh-pr-* branches, or any time github_pr is provided)
# - telegram: message captured by telegram bot (must be tagged explicitly by
# ingestion — extract/* default is "unknown" because the bare branch prefix
# can no longer distinguish telegram-origin from github-origin extractions)
# - agent: per-agent research branches (rio/, theseus/, etc.)
# - maintenance: pipeline housekeeping (reweave/, epimetheus/, fix/)
# - web: future in-app submissions (chat UI or form posts)
# - unknown: fallback when provenance cannot be determined
_CHANNEL_MAP = {
"extract": "unknown",
"ingestion": "unknown",
"rio": "agent",
"theseus": "agent",
"astra": "agent",
"vida": "agent",
"clay": "agent",
"leo": "agent",
"oberon": "agent",
"reweave": "maintenance",
"epimetheus": "maintenance",
"fix": "maintenance",
}
def classify_source_channel(branch: str, *, github_pr: int = None) -> str:
"""Derive source_channel from branch prefix and github_pr flag.
Precedence: github_pr flag > gh-pr- branch prefix > _CHANNEL_MAP lookup.
extract/* defaults to "unknown" — callers with better provenance (telegram
bot, web submission handler) must override at PR-insert time.
"""
if github_pr is not None or branch.startswith("gh-pr-"):
return "github"
prefix = branch.split("/", 1)[0] if "/" in branch else branch
return _CHANNEL_MAP.get(prefix, "unknown")
def migrate(conn: sqlite3.Connection):
"""Run schema migrations."""
conn.executescript(SCHEMA_SQL)
# Check current version
try:
row = conn.execute("SELECT MAX(version) as v FROM schema_version").fetchone()
current = row["v"] if row and row["v"] else 0
except sqlite3.OperationalError:
current = 0
# --- Incremental migrations ---
if current < 2:
# Phase 2: add multiplayer columns to prs table
for stmt in [
"ALTER TABLE prs ADD COLUMN priority TEXT",
"ALTER TABLE prs ADD COLUMN origin TEXT DEFAULT 'pipeline'",
"ALTER TABLE prs ADD COLUMN last_error TEXT",
]:
try:
conn.execute(stmt)
except sqlite3.OperationalError:
pass # Column already exists (idempotent)
logger.info("Migration v2: added priority, origin, last_error to prs")
if current < 3:
# Phase 3: retry budget — track eval attempts and issue tags per PR
for stmt in [
"ALTER TABLE prs ADD COLUMN eval_attempts INTEGER DEFAULT 0",
"ALTER TABLE prs ADD COLUMN eval_issues TEXT DEFAULT '[]'",
]:
try:
conn.execute(stmt)
except sqlite3.OperationalError:
pass # Column already exists (idempotent)
logger.info("Migration v3: added eval_attempts, eval_issues to prs")
if current < 4:
# Phase 4: auto-fixer — track fix attempts per PR
for stmt in [
"ALTER TABLE prs ADD COLUMN fix_attempts INTEGER DEFAULT 0",
]:
try:
conn.execute(stmt)
except sqlite3.OperationalError:
pass # Column already exists (idempotent)
logger.info("Migration v4: added fix_attempts to prs")
if current < 5:
# Phase 5: contributor identity system — tracks who contributed what
# Aligned with schemas/attribution.md (5 roles) + Leo's tier system.
# CI is COMPUTED from raw counts x weights, never stored.
conn.executescript("""
CREATE TABLE IF NOT EXISTS contributors (
handle TEXT PRIMARY KEY,
display_name TEXT,
agent_id TEXT,
first_contribution TEXT,
last_contribution TEXT,
tier TEXT DEFAULT 'new',
-- new, contributor, veteran
sourcer_count INTEGER DEFAULT 0,
extractor_count INTEGER DEFAULT 0,
challenger_count INTEGER DEFAULT 0,
synthesizer_count INTEGER DEFAULT 0,
reviewer_count INTEGER DEFAULT 0,
claims_merged INTEGER DEFAULT 0,
challenges_survived INTEGER DEFAULT 0,
domains TEXT DEFAULT '[]',
highlights TEXT DEFAULT '[]',
identities TEXT DEFAULT '{}',
created_at TEXT DEFAULT (datetime('now')),
updated_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_contributors_tier ON contributors(tier);
""")
logger.info("Migration v5: added contributors table")
if current < 6:
# Phase 6: analytics — time-series metrics snapshots for trending dashboard
conn.executescript("""
CREATE TABLE IF NOT EXISTS metrics_snapshots (
ts TEXT DEFAULT (datetime('now')),
throughput_1h INTEGER,
approval_rate REAL,
open_prs INTEGER,
merged_total INTEGER,
closed_total INTEGER,
conflict_total INTEGER,
evaluated_24h INTEGER,
fix_success_rate REAL,
rejection_broken_wiki_links INTEGER DEFAULT 0,
rejection_frontmatter_schema INTEGER DEFAULT 0,
rejection_near_duplicate INTEGER DEFAULT 0,
rejection_confidence INTEGER DEFAULT 0,
rejection_other INTEGER DEFAULT 0,
extraction_model TEXT,
eval_domain_model TEXT,
eval_leo_model TEXT,
prompt_version TEXT,
pipeline_version TEXT,
source_origin_agent INTEGER DEFAULT 0,
source_origin_human INTEGER DEFAULT 0,
source_origin_scraper INTEGER DEFAULT 0
);
CREATE INDEX IF NOT EXISTS idx_snapshots_ts ON metrics_snapshots(ts);
""")
logger.info("Migration v6: added metrics_snapshots table for analytics dashboard")
if current < 7:
# Phase 7: agent attribution + commit_type for dashboard
# commit_type column + backfill agent/commit_type from branch prefix
try:
conn.execute("ALTER TABLE prs ADD COLUMN commit_type TEXT CHECK(commit_type IS NULL OR commit_type IN ('extract', 'research', 'entity', 'decision', 'reweave', 'fix', 'unknown'))")
except sqlite3.OperationalError:
pass # column already exists from CREATE TABLE
# Backfill agent and commit_type from branch prefix
rows = conn.execute("SELECT number, branch FROM prs WHERE branch IS NOT NULL").fetchall()
for row in rows:
agent, commit_type = classify_branch(row["branch"])
conn.execute(
"UPDATE prs SET agent = ?, commit_type = ? WHERE number = ? AND (agent IS NULL OR commit_type IS NULL)",
(agent, commit_type, row["number"]),
)
backfilled = len(rows)
logger.info("Migration v7: added commit_type column, backfilled %d PRs with agent/commit_type", backfilled)
if current < 8:
# Phase 8: response audit — full-chain visibility for agent response quality
# Captures: query → tool calls → retrieval → context → response → confidence
# Approved by Ganymede (architecture), Rio (agent needs), Rhea (ops)
conn.executescript("""
CREATE TABLE IF NOT EXISTS response_audit (
id INTEGER PRIMARY KEY AUTOINCREMENT,
timestamp TEXT NOT NULL DEFAULT (datetime('now')),
chat_id INTEGER,
user TEXT,
agent TEXT DEFAULT 'rio',
model TEXT,
query TEXT,
conversation_window TEXT, -- intentional transcript duplication for audit self-containment
entities_matched TEXT,
claims_matched TEXT,
retrieval_layers_hit TEXT,
retrieval_gap TEXT,
market_data TEXT,
research_context TEXT,
kb_context_text TEXT,
tool_calls TEXT,
raw_response TEXT,
display_response TEXT,
confidence_score REAL,
response_time_ms INTEGER,
created_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_response_audit_ts ON response_audit(timestamp);
CREATE INDEX IF NOT EXISTS idx_response_audit_agent ON response_audit(agent);
CREATE INDEX IF NOT EXISTS idx_response_audit_chat_ts ON response_audit(chat_id, timestamp);
""")
logger.info("Migration v8: added response_audit table for agent response auditing")
if current < 9:
# Phase 9: rebuild prs table to expand CHECK constraint on commit_type.
# SQLite cannot ALTER CHECK constraints in-place — must rebuild table.
# Old constraint (v7): extract,research,entity,decision,reweave,fix,unknown
# New constraint: adds challenge,enrich,synthesize
# Also re-derive commit_type from branch prefix for rows with invalid/NULL values.
prs_sql_row = conn.execute(
"SELECT sql FROM sqlite_master WHERE type = 'table' AND name = 'prs'"
).fetchone()
prs_sql = (prs_sql_row["sql"] or "") if prs_sql_row else ""
if all(kind in prs_sql for kind in ("challenge", "enrich", "synthesize")):
logger.info("Migration v9: prs commit_type CHECK already expanded, rebuild skipped")
else:
# Step 1: Get all column names from existing table.
cols_info = conn.execute("PRAGMA table_info(prs)").fetchall()
col_names = [c["name"] for c in cols_info]
# Step 2: Create new table with the expanded CHECK constraint.
# Keep columns introduced before and after v9 when present. This keeps
# fresh DB bootstrap and partially manually-migrated VPS DBs idempotent.
target_cols = [
"number",
"source_path",
"branch",
"status",
"domain",
"agent",
"commit_type",
"tier",
"tier0_pass",
"leo_verdict",
"domain_verdict",
"domain_agent",
"domain_model",
"priority",
"origin",
"eval_attempts",
"eval_issues",
"fix_attempts",
"transient_retries",
"substantive_retries",
"last_error",
"last_attempt",
"cost_usd",
"auto_merge",
"github_pr",
"source_channel",
"prompt_version",
"pipeline_version",
"submitted_by",
"conflict_rebase_attempts",
"merge_failures",
"merge_cycled",
"created_at",
"merged_at",
]
insert_cols = [col for col in target_cols if col in col_names]
col_list = ", ".join(insert_cols)
conn.executescript("""
CREATE TABLE prs_new (
number INTEGER PRIMARY KEY,
source_path TEXT REFERENCES sources(path),
branch TEXT,
status TEXT NOT NULL DEFAULT 'open',
domain TEXT,
agent TEXT,
commit_type TEXT CHECK(commit_type IS NULL OR commit_type IN ('extract','research','entity','decision','reweave','fix','challenge','enrich','synthesize','unknown')),
tier TEXT,
tier0_pass INTEGER,
leo_verdict TEXT DEFAULT 'pending',
domain_verdict TEXT DEFAULT 'pending',
domain_agent TEXT,
domain_model TEXT,
priority TEXT,
origin TEXT DEFAULT 'pipeline',
eval_attempts INTEGER DEFAULT 0,
eval_issues TEXT DEFAULT '[]',
fix_attempts INTEGER DEFAULT 0,
transient_retries INTEGER DEFAULT 0,
substantive_retries INTEGER DEFAULT 0,
last_error TEXT,
last_attempt TEXT,
cost_usd REAL DEFAULT 0,
auto_merge INTEGER DEFAULT 0,
github_pr INTEGER,
source_channel TEXT,
prompt_version TEXT,
pipeline_version TEXT,
submitted_by TEXT,
conflict_rebase_attempts INTEGER DEFAULT 0,
merge_failures INTEGER DEFAULT 0,
merge_cycled INTEGER DEFAULT 0,
created_at TEXT DEFAULT (datetime('now')),
merged_at TEXT
);
""")
if insert_cols:
conn.execute(f"INSERT INTO prs_new ({col_list}) SELECT {col_list} FROM prs")
conn.executescript("""
DROP TABLE prs;
ALTER TABLE prs_new RENAME TO prs;
""")
logger.info("Migration v9: rebuilt prs table with expanded commit_type CHECK constraint")
# Step 3: Re-derive commit_type from branch prefix for invalid/NULL values
rows = conn.execute(
"""SELECT number, branch FROM prs
WHERE branch IS NOT NULL
AND (commit_type IS NULL
OR commit_type NOT IN ('extract','research','entity','decision','reweave','fix','challenge','enrich','synthesize','unknown'))"""
).fetchall()
fixed = 0
for row in rows:
agent, commit_type = classify_branch(row["branch"])
conn.execute(
"UPDATE prs SET agent = COALESCE(agent, ?), commit_type = ? WHERE number = ?",
(agent, commit_type, row["number"]),
)
fixed += 1
conn.commit()
logger.info("Migration v9: re-derived commit_type for %d PRs with invalid/NULL values", fixed)
if current < 10:
# Add eval pipeline columns to response_audit
# VPS may already be at v10/v11 from prior (incomplete) deploys — use IF NOT EXISTS pattern
for col_def in [
("prompt_tokens", "INTEGER"),
("completion_tokens", "INTEGER"),
("generation_cost", "REAL"),
("embedding_cost", "REAL"),
("total_cost", "REAL"),
("blocked", "INTEGER DEFAULT 0"),
("block_reason", "TEXT"),
("query_type", "TEXT"),
]:
try:
conn.execute(f"ALTER TABLE response_audit ADD COLUMN {col_def[0]} {col_def[1]}")
except sqlite3.OperationalError:
pass # Column already exists
conn.commit()
logger.info("Migration v10: added eval pipeline columns to response_audit")
if current < 11:
# Add auto_merge flag for agent PR auto-merge (eval-approved agent branches)
try:
conn.execute("ALTER TABLE prs ADD COLUMN auto_merge INTEGER DEFAULT 0")
except sqlite3.OperationalError:
pass # Column already exists (VPS may be ahead of repo schema)
conn.commit()
logger.info("Migration v11: added auto_merge column to prs table")
# v12-v16 ran manually on VPS before code was version-controlled.
# Their changes are consolidated into v17+ migrations below.
if current < 17:
# Add prompt/pipeline version tracking per PR
for col, _default in [
("prompt_version", None),
("pipeline_version", None),
]:
try:
conn.execute(f"ALTER TABLE prs ADD COLUMN {col} TEXT")
except sqlite3.OperationalError:
pass # Column already exists
conn.commit()
logger.info("Migration v17: added prompt_version, pipeline_version to prs table")
if current < 18:
conn.executescript("""
CREATE TABLE IF NOT EXISTS review_records (
id INTEGER PRIMARY KEY AUTOINCREMENT,
pr_number INTEGER NOT NULL,
claim_path TEXT,
domain TEXT,
agent TEXT,
reviewer TEXT,
reviewer_model TEXT,
outcome TEXT NOT NULL,
rejection_reason TEXT,
disagreement_type TEXT,
notes TEXT,
batch_id TEXT,
claims_in_batch INTEGER,
reviewed_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_review_records_pr ON review_records(pr_number);
CREATE INDEX IF NOT EXISTS idx_review_records_agent ON review_records(agent);
""")
conn.commit()
logger.info("Migration v18: created review_records table")
if current < 19:
# Add submitted_by for contributor attribution tracing.
# Tracks who submitted the source: human handle, agent name, or "self-directed".
try:
conn.execute("ALTER TABLE prs ADD COLUMN submitted_by TEXT")
except sqlite3.OperationalError:
pass # Column already exists
try:
conn.execute("ALTER TABLE sources ADD COLUMN submitted_by TEXT")
except sqlite3.OperationalError:
pass
conn.commit()
logger.info("Migration v19: added submitted_by to prs and sources tables")
if current < 20:
for col, default in [
("conflict_rebase_attempts", "INTEGER DEFAULT 0"),
("merge_failures", "INTEGER DEFAULT 0"),
("merge_cycled", "INTEGER DEFAULT 0"),
]:
try:
conn.execute(f"ALTER TABLE prs ADD COLUMN {col} {default}")
except sqlite3.OperationalError:
pass
conn.commit()
logger.info("Migration v20: added conflict retry columns to prs")
if current < 21:
try:
conn.execute("ALTER TABLE prs ADD COLUMN github_pr INTEGER")
except sqlite3.OperationalError:
pass
conn.execute(
"CREATE INDEX IF NOT EXISTS idx_prs_github_pr ON prs (github_pr) WHERE github_pr IS NOT NULL"
)
conn.commit()
logger.info("Migration v21: added github_pr column + index to prs")
if current < 22:
try:
conn.execute("ALTER TABLE prs ADD COLUMN source_channel TEXT")
except sqlite3.OperationalError:
pass
conn.execute("""
UPDATE prs SET source_channel = CASE
WHEN github_pr IS NOT NULL THEN 'github'
WHEN branch LIKE 'gh-pr-%%' THEN 'github'
WHEN branch LIKE 'theseus/%%' THEN 'agent'
WHEN branch LIKE 'rio/%%' THEN 'agent'
WHEN branch LIKE 'astra/%%' THEN 'agent'
WHEN branch LIKE 'clay/%%' THEN 'agent'
WHEN branch LIKE 'vida/%%' THEN 'agent'
WHEN branch LIKE 'oberon/%%' THEN 'agent'
WHEN branch LIKE 'leo/%%' THEN 'agent'
WHEN branch LIKE 'reweave/%%' THEN 'maintenance'
WHEN branch LIKE 'epimetheus/%%' THEN 'maintenance'
WHEN branch LIKE 'fix/%%' THEN 'maintenance'
WHEN branch LIKE 'extract/%%' THEN 'telegram'
WHEN branch LIKE 'ingestion/%%' THEN 'telegram'
ELSE 'unknown'
END
WHERE source_channel IS NULL
""")
conn.commit()
logger.info("Migration v22: added source_channel to prs + backfilled from branch prefix")
if current < 23:
conn.execute(
"CREATE INDEX IF NOT EXISTS idx_prs_source_path ON prs(source_path) WHERE source_path IS NOT NULL"
)
conn.commit()
logger.info("Migration v23: added idx_prs_source_path for auto-close dedup lookup")
if current < 24:
# Event-sourced contributions table + alias table + kind column on contributors.
# Non-breaking: contributors table stays; events are written in addition via
# double-write in merge.py. Leaderboards switch to events in Phase B.
conn.executescript("""
CREATE TABLE IF NOT EXISTS contribution_events (
id INTEGER PRIMARY KEY AUTOINCREMENT,
handle TEXT NOT NULL,
kind TEXT NOT NULL DEFAULT 'person',
role TEXT NOT NULL,
weight REAL NOT NULL,
pr_number INTEGER NOT NULL,
claim_path TEXT,
domain TEXT,
channel TEXT,
timestamp TEXT NOT NULL DEFAULT (datetime('now'))
);
-- Partial unique indexes handle SQLite's NULL != NULL UNIQUE semantics.
-- Per-claim events dedup on 4-tuple; PR-level events dedup on 3-tuple.
CREATE UNIQUE INDEX IF NOT EXISTS idx_ce_unique_claim ON contribution_events(
handle, role, pr_number, claim_path
) WHERE claim_path IS NOT NULL;
CREATE UNIQUE INDEX IF NOT EXISTS idx_ce_unique_pr ON contribution_events(
handle, role, pr_number
) WHERE claim_path IS NULL;
CREATE INDEX IF NOT EXISTS idx_ce_handle_ts ON contribution_events(handle, timestamp);
CREATE INDEX IF NOT EXISTS idx_ce_domain_ts ON contribution_events(domain, timestamp);
CREATE INDEX IF NOT EXISTS idx_ce_pr ON contribution_events(pr_number);
CREATE INDEX IF NOT EXISTS idx_ce_role_ts ON contribution_events(role, timestamp);
CREATE INDEX IF NOT EXISTS idx_ce_kind_ts ON contribution_events(kind, timestamp);
CREATE TABLE IF NOT EXISTS contributor_aliases (
alias TEXT PRIMARY KEY,
canonical TEXT NOT NULL,
created_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_aliases_canonical ON contributor_aliases(canonical);
""")
try:
conn.execute("ALTER TABLE contributors ADD COLUMN kind TEXT DEFAULT 'person'")
except sqlite3.OperationalError:
pass # column already exists
# Seed known aliases. @thesensatore → thesensatore catches the zombie row Argus flagged.
# cameron → cameron-s1 reconciles the Leo-flagged missing contributor.
conn.executemany(
"INSERT OR IGNORE INTO contributor_aliases (alias, canonical) VALUES (?, ?)",
[
("@thesensatore", "thesensatore"),
("cameron", "cameron-s1"),
],
)
# Seed kind='agent' for known Pentagon agents so the events writer picks it up.
# Must stay in sync with lib/attribution.PENTAGON_AGENTS — drift causes
# contributors.kind to disagree with classify_kind() output for future
# inserts. (Ganymede review: "pipeline" was missing until Apr 24.)
pentagon_agents = [
"rio", "leo", "theseus", "vida", "clay", "astra",
"oberon", "argus", "rhea", "ganymede", "epimetheus", "hermes", "ship",
"pipeline",
]
for agent in pentagon_agents:
conn.execute(
"UPDATE contributors SET kind = 'agent' WHERE handle = ?",
(agent,),
)
conn.commit()
logger.info("Migration v24: added contribution_events + contributor_aliases tables, kind column")
if current < 25:
# v24 seeded 13 Pentagon agents but missed "pipeline" — classify_kind()
# treats it as agent so contributors.kind drifted from event-insert output.
# Idempotent corrective UPDATE: fresh installs have no "pipeline" row
# (no-op), upgraded envs flip it if it exists. (Ganymede review Apr 24.)
conn.execute(
"UPDATE contributors SET kind = 'agent' WHERE handle = 'pipeline'"
)
conn.commit()
logger.info("Migration v25: patched kind='agent' for pipeline handle")
if current < 26:
# Add publishers + contributor_identities. Non-breaking — new tables only.
# No existing data moved. Classification into publishers happens via a
# separate script (scripts/reclassify-contributors.py) with Cory-reviewed
# seed list. CHECK constraint on contributors.kind deferred until after
# classification completes. (Apr 24 Cory directive: "fix schema, don't
# filter output" — separate contributors from publishers at the data layer.)
conn.executescript("""
CREATE TABLE IF NOT EXISTS publishers (
id INTEGER PRIMARY KEY AUTOINCREMENT,
name TEXT NOT NULL UNIQUE,
kind TEXT CHECK(kind IN ('news', 'academic', 'social_platform', 'podcast', 'self', 'internal', 'legal', 'government', 'research_org', 'commercial', 'other')),
url_pattern TEXT,
created_at TEXT DEFAULT (datetime('now'))
);
CREATE INDEX IF NOT EXISTS idx_publishers_name ON publishers(name);
CREATE INDEX IF NOT EXISTS idx_publishers_kind ON publishers(kind);
CREATE TABLE IF NOT EXISTS contributor_identities (
contributor_handle TEXT NOT NULL,
platform TEXT NOT NULL CHECK(platform IN ('x', 'telegram', 'github', 'email', 'web', 'internal')),
platform_handle TEXT NOT NULL,
verified INTEGER DEFAULT 0,
created_at TEXT DEFAULT (datetime('now')),
PRIMARY KEY (platform, platform_handle)
);
CREATE INDEX IF NOT EXISTS idx_identities_contributor ON contributor_identities(contributor_handle);
""")
# Extend sources with provenance columns. ALTER TABLE ADD COLUMN is
# idempotent-safe via try/except because SQLite doesn't support IF NOT EXISTS
# on column adds.
for col_sql in (
"ALTER TABLE sources ADD COLUMN publisher_id INTEGER REFERENCES publishers(id)",
"ALTER TABLE sources ADD COLUMN content_type TEXT",
"ALTER TABLE sources ADD COLUMN original_author TEXT",
"ALTER TABLE sources ADD COLUMN original_author_handle TEXT REFERENCES contributors(handle)",
):
try:
conn.execute(col_sql)
except sqlite3.OperationalError as e:
if "duplicate column" not in str(e).lower():
raise
conn.commit()
logger.info("Migration v26: added publishers + contributor_identities tables + sources provenance columns")
if current < 27:
for col, definition in [
("duration_ms", "INTEGER DEFAULT 0"),
("cache_read_tokens", "INTEGER DEFAULT 0"),
("cache_write_tokens", "INTEGER DEFAULT 0"),
("cost_estimate_usd", "REAL DEFAULT 0"),
]:
try:
conn.execute(f"ALTER TABLE costs ADD COLUMN {col} {definition}")
except sqlite3.OperationalError:
pass
conn.commit()
logger.info("Migration v27: added detailed cost accounting columns")
if current < SCHEMA_VERSION:
conn.execute(
"INSERT OR REPLACE INTO schema_version (version) VALUES (?)",
(SCHEMA_VERSION,),
)
conn.commit() # Explicit commit — executescript auto-commits DDL but not subsequent DML
logger.info("Database migrated to schema version %d", SCHEMA_VERSION)
else:
logger.debug("Database at schema version %d", current)
def audit(conn: sqlite3.Connection, stage: str, event: str, detail: str = None):
"""Write an audit log entry."""
conn.execute(
"INSERT INTO audit_log (stage, event, detail) VALUES (?, ?, ?)",
(stage, event, detail),
)
def record_review(
conn: sqlite3.Connection,
pr_number: int,
outcome: str,
*,
domain: str = None,
agent: str = None,
reviewer: str = None,
reviewer_model: str = None,
rejection_reason: str = None,
disagreement_type: str = None,
notes: str = None,
claims_in_batch: int = None,
):
"""Write a review record. Called at each eval verdict point."""
conn.execute(
"""INSERT INTO review_records
(pr_number, domain, agent, reviewer, reviewer_model, outcome,
rejection_reason, disagreement_type, notes, batch_id, claims_in_batch)
VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)""",
(
pr_number, domain, agent, reviewer, reviewer_model, outcome,
rejection_reason, disagreement_type,
notes[:4000] if notes else None,
str(pr_number), # batch_id = PR number
claims_in_batch,
),
)
def append_priority_log(conn: sqlite3.Connection, path: str, stage: str, priority: str, reasoning: str):
"""Append a priority assessment to a source's priority_log.
NOTE: This does NOT update the source's priority column. The priority column
is the authoritative priority, set only by initial triage or human override.
The priority_log records each stage's opinion for offline calibration analysis.
(Bug caught by Theseus — original version overwrote priority with each stage's opinion.)
(Race condition fix per Vida — read-then-write wrapped in transaction.)
"""
conn.execute("BEGIN")
try:
row = conn.execute("SELECT priority_log FROM sources WHERE path = ?", (path,)).fetchone()
if not row:
conn.execute("ROLLBACK")
return
log = json.loads(row["priority_log"] or "[]")
log.append({"stage": stage, "priority": priority, "reasoning": reasoning})
conn.execute(
"UPDATE sources SET priority_log = ?, updated_at = datetime('now') WHERE path = ?",
(json.dumps(log), path),
)
conn.execute("COMMIT")
except Exception:
conn.execute("ROLLBACK")
raise
def insert_response_audit(conn: sqlite3.Connection, **kwargs):
"""Insert a response audit record. All fields optional except query."""
cols = [
"timestamp", "chat_id", "user", "agent", "model", "query",
"conversation_window", "entities_matched", "claims_matched",
"retrieval_layers_hit", "retrieval_gap", "market_data",
"research_context", "kb_context_text", "tool_calls",
"raw_response", "display_response", "confidence_score",
"response_time_ms",
# Eval pipeline columns (v10)
"prompt_tokens", "completion_tokens", "generation_cost",
"embedding_cost", "total_cost", "blocked", "block_reason",
"query_type",
]
present = {k: v for k, v in kwargs.items() if k in cols and v is not None}
if not present:
return
col_names = ", ".join(present.keys())
placeholders = ", ".join("?" for _ in present)
conn.execute(
f"INSERT INTO response_audit ({col_names}) VALUES ({placeholders})",
tuple(present.values()),
)
def set_priority(conn: sqlite3.Connection, path: str, priority: str, reason: str = "human override"):
"""Set a source's authoritative priority. Used for human overrides and initial triage."""
conn.execute(
"UPDATE sources SET priority = ?, updated_at = datetime('now') WHERE path = ?",
(priority, path),
)
append_priority_log(conn, path, "override", priority, reason)