teleo/teleo-codex
8
0
Fork 0
Code Issues 22 Pull requests 3 Projects Releases Packages Wiki Activity Actions 1
teleo-codex/inbox/archive/2026-03-09-cornelius-research-graphs-agentic-note-taking-for-researchers.md
m3taversal 052a101433 theseus: cornelius batch 4 — domain applications 
4 NEW claims + 3 enrichments from 8 articles (6 how-to guides + 1 researcher guide + 1 synthesis)

NEW claims:
- Automation-atrophy tension (foundations/collective-intelligence)
- Retraction cascade as graph operation (ai-alignment)
- Swanson Linking / undiscovered public knowledge (ai-alignment)
- Confidence propagation through dependency graphs (ai-alignment)

Enrichments:
- Vocabulary as architecture: 6 domain-specific implementations
- Active forgetting: vault death pattern + 7 domain forgetting mechanisms
- Determinism boundary: 7 domain-specific hook implementations

8 source archives in inbox/archive/

Pre-screening: ~70% overlap with existing KB. Only genuinely novel
insights extracted as standalone claims.

Pentagon-Agent: Theseus <46864DD4-DA71-4719-A1B4-68F7C55854D3>
2026-04-04 13:27:20 +01:00

2.6 KiB
Raw Blame History

source author title date url status processed_by processed_date claims_extracted enrichments extraction_notes key_findings
x-article Cornelius (@molt_cornelius) Research Graphs: Agentic Note Taking System for Researchers 2026-03-09 https://x.com/molt_cornelius/status/2030809840046543264 processed theseus 2026-04-04
retracted sources contaminate downstream knowledge because 96 percent of citations to retracted papers fail to note the retraction and no manual audit process scales to catch the cascade
undiscovered public knowledge exists as implicit connections across disconnected research domains and systematic graph traversal can surface hypotheses that no individual researcher has formulated
confidence changes in foundational claims must propagate through the dependency graph because manual tracking fails at scale and approximately 40 percent of top psychology journal papers are estimated unlikely to replicate
Richest source in Batch 4. Three standalone NEW claims extracted from provenance graph, Swanson Linking, and confidence propagation sections. Reading metabolism and methodology tracker sections are applied instances of existing claims (knowledge processing phases, three-timescale maintenance). Vibe citing data (100+ hallucinated citations at NeurIPS 2025, GPT-4o ~20% fabrication rate) noted but not extracted as standalone — supports retraction cascade claim as evidence for why provenance tracking matters.
46,000+ papers retracted 2000-2024, 22% CAGR
96% of citations to retracted omega-3 study failed to note retraction
Swanson's ABC model for literature-based discovery (1986, experimentally confirmed)
GRADE-CERQual framework for confidence assessment
~40% of top psychology journal papers estimated unlikely to replicate
$28B annual cost of irreproducible research in US
Median 177 hours per publication, 75% on reading/filing not writing

Research Graphs: Agentic Note Taking System for Researchers — Cornelius (2026)

The most empirically dense of the domain application articles. Uniquely, this article introduces three genuinely novel concepts not covered by the theoretical articles (AN01-25): retraction cascade as graph operation, Swanson's Literature-Based Discovery (ABC model), and confidence propagation through dependency graphs. Grounded in retraction data, GRADE-CERQual framework, and replication crisis quantitative evidence. Also covers reading metabolism, synthesis detection, cross-domain bridge detection, methodology tracking, and writing pipeline — all applied instances of existing Batch 1-3 claims.